|Uses the given identifier to return its latest version
|Retrieve the latest version for a set of identifiers
|Retrieves genomic alignments as separate blocks based on a region and species
|Retrieves homology information (orthologs) by Ensembl gene id. DEPRECATED: use homology/id/:species/:id instead.
|Retrieves homology information (orthologs) by Ensembl gene id
|Retrieves homology information (orthologs) by symbol
|Looks up an external symbol and returns all Ensembl objects linked to it. This can be a display name for a gene/transcript/translation, a synonym or an externally linked reference. If a gene's transcript is linked to the supplied symbol the service will return both gene and transcript (it supports transient links).
|Perform lookups of Ensembl Identifiers and retrieve their external references in other databases
|Performs a lookup based upon the primary accession or display label of an external reference and returning the information we hold about the entry
|List the names of analyses involved in generating Ensembl data.
|List the currently available assemblies for a species, along with toplevel sequences, chromosomes and cytogenetic bands.
|Returns information about the specified toplevel sequence region for the given species.
|List the functional classifications of gene models that Ensembl associates with a particular species. Useful for restricting the type of genes/transcripts retrieved by other endpoints.
|Without argument the list of available biotype groups is returned. With :group argument provided, list the properties of biotypes within that group. Object type (gene or transcript) can be provided for filtering.
|List the properties of biotypes with a given name. Object type (gene or transcript) can be provided for filtering.
|List all compara analyses available (an analysis defines the type of comparative data).
|List all collections of species analysed with the specified compara method.
|Lists all available comparative genomics databases and their data release. DEPRECATED: use info/genomes/division instead.
|Shows the data releases available on this REST server. May return more than one release (unfrequent non-standard Ensembl configuration).
|Lists all available external sources for a species.
|Checks if the service is alive.
|Shows the current version of the Ensembl REST API.
|Shows the current version of the Ensembl API used by the REST server.
|Lists all available species, their aliases, available adaptor groups and data release.
|List the variation sources used in Ensembl for a species.
|Lists all variant consequence types.
|List all individuals for a population from a species
|List all populations for a species
|Computes and returns LD values between the given variant and all other variants in a window centered around the given variant. The window size is set to 500 kb.
|Computes and returns LD values between the given variants.
|Computes and returns LD values between all pairs of variants in the defined region.
|Find the species and database for a single identifier e.g. gene, transcript, protein
|Find the species and database for several identifiers. IDs that are not found are returned with no data.
|Find the species and database for a symbol in a linked external database
|Find the species and database for a set of symbols in a linked external database. Unknown symbols are omitted from the response.
|Convert from cDNA coordinates to genomic coordinates. Output reflects forward orientation coordinates as returned from the Ensembl API.
|Convert from CDS coordinates to genomic coordinates. Output reflects forward orientation coordinates as returned from the Ensembl API.
|Convert the co-ordinates of one assembly to another
|Convert from protein (translation) coordinates to genomic coordinates. Output reflects forward orientation coordinates as returned from the Ensembl API.
Ontologies and Taxonomy
|Reconstruct the entire ancestry of a term from is_a and part_of relationships
|Reconstruct the entire ancestry of a term from is_a and part_of relationships.
|Find all the terms descended from a given term. By default searches are conducted within the namespace of the given identifier
|Search for an ontological term by its namespaced identifier
|Search for a list of ontological terms by their name
|Return the taxonomic classification of a taxon node
|Search for a taxonomic term by its identifier or name
|Search for a taxonomic id by a non-scientific name
|Retrieves features (e.g. genes, transcripts, variants and more) that overlap a region defined by the given identifier.
|Retrieves features (e.g. genes, transcripts, variants and more) that overlap a given region.
|Retrieve features related to a specific Translation as described by its stable ID (e.g. domains, variants).
|Return phenotype annotations for genomic features given a phenotype ontology accession
|Return phenotype annotations for a given gene.
|Return phenotype annotations that overlap a given genomic region.
|Return phenotype annotations for genomic features given a phenotype ontology term
|Returns information about a specific microarray
|Returns information about all epigenomes available for the given species
|Return the specified binding matrix
|Returns information about all microarrays available for the given species
|Returns information about a specific probe from a microarray
|Returns information about a specific probe_set from a microarray
|Returns a RegulatoryFeature given its stable ID (e.g. ENSR00000082023)
|Request multiple types of sequence by stable identifier. Supports feature masking and expand options.
|Request multiple types of sequence by a stable identifier list.
|Returns the genomic sequence of the specified region of the given species. Supports feature masking and expand options.
|Request multiple types of sequence by a list of regions.
|Computes observed transcript haplotype sequences based on phased genotype data
|Fetch variant consequences based on a HGVS notation
|Fetch variant consequences for multiple HGVS notations
|Fetch variant consequences based on a variant identifier
|Fetch variant consequences for multiple ids
|Fetch variant consequences
|Fetch variant consequences for multiple regions
|Translate a variant identifier, HGVS notation or genomic SPDI notation to all possible variant IDs, HGVS and genomic SPDI
|Translate a list of variant identifiers, HGVS notations or genomic SPDI notations to all possible variant IDs, HGVS and genomic SPDI
|Uses a variant identifier (e.g. rsID) to return the variation features including optional genotype, phenotype and population data
|Fetch variants by publication using PubMed Central reference number (PMCID)
|Fetch variants by publication using PubMed reference number (PMID)
|Uses a list of variant identifiers (e.g. rsID) to return the variation features including optional genotype, phenotype and population data
|Return Beacon information
|Return the Beacon response for allele information
|Return the Beacon response for allele information
|Return the GA4GH record for a specific sequence feature given its identifier
|Return a list of sequence annotation features in GA4GH format
|Return a list of sets of genotype calls for specific samples in GA4GH format
|Return the GA4GH record for a specific CallSet given its identifier
|Return a list of datasets in GA4GH format
|Return the GA4GH record for a specific dataset given its identifier
|Return a list of feature sets in GA4GH format
|Return the GA4GH record for a specific featureSet given its identifier
|Return the GA4GH record for a specific variant given its identifier.
|Return variant annotation information in GA4GH format for a region on a reference sequence
|Return variant call information in GA4GH format for a region on a reference sequence
|Return a list of variant sets in GA4GH format
|Return the GA4GH record for a specific VariantSet given its identifier
|Return a list of reference sequences in GA4GH format
|Return data for a specific reference in GA4GH format by id
|Return a list of reference sets in GA4GH format
|Return data for a specific reference set in GA4GH format
|Return a list of annotation sets in GA4GH format
|Return meta data for a specific annotation set in GA4GH format