use strict;
use warnings;
use HTTP::Tiny;
my $http = HTTP::Tiny->new();
my $server = 'https://grch37.rest.ensembl.org';
my $ext = '/ga4gh/variants/search';
my $response = $http->request('POST', $server.$ext, {
headers => {
'Content-type' => 'application/json',
'Accept' => 'application/json'
},
content => '{ "variantSetId": 3, "callSetIds":[ "3:NA19777" , "3:HG01242" , "3:HG01142" ], "referenceName": 22,"start": 17190024 ,"end": 17671934 , "pageToken":"", "pageSize": 3 }'
});
die "Failed!\n" unless $response->{success};
use JSON;
use Data::Dumper;
if(length $response->{content}) {
my $hash = decode_json($response->{content});
local $Data::Dumper::Terse = 1;
local $Data::Dumper::Indent = 1;
print Dumper $hash;
print "\n";
}
import requests, sys
server = "https://grch37.rest.ensembl.org"
ext = "/ga4gh/variants/search"
headers={ "Content-Type" : "application/json", "Accept" : "application/json"}
r = requests.post(server+ext, headers=headers, data='{ "variantSetId": 3, "callSetIds":[ "3:NA19777" , "3:HG01242" , "3:HG01142" ], "referenceName": 22,"start": 17190024 ,"end": 17671934 , "pageToken":"", "pageSize": 3 }')
if not r.ok:
r.raise_for_status()
sys.exit()
decoded = r.json()
print repr(decoded)
import requests, sys
server = "https://grch37.rest.ensembl.org"
ext = "/ga4gh/variants/search"
headers={ "Content-Type" : "application/json", "Accept" : "application/json"}
r = requests.post(server+ext, headers=headers, data='{ "variantSetId": 3, "callSetIds":[ "3:NA19777" , "3:HG01242" , "3:HG01142" ], "referenceName": 22,"start": 17190024 ,"end": 17671934 , "pageToken":"", "pageSize": 3 }')
if not r.ok:
r.raise_for_status()
sys.exit()
decoded = r.json()
print(repr(decoded))
require 'net/http'
require 'uri'
server='https://grch37.rest.ensembl.org'
path = '/ga4gh/variants/search'
url = URI.parse(server)
http = Net::HTTP.new(url.host, url.port)
request = Net::HTTP::Post.new(path, {'Content-Type' => 'application/json', 'Accept' => 'application/json'})
request.body = '{ "variantSetId": 3, "callSetIds":[ "3:NA19777" , "3:HG01242" , "3:HG01142" ], "referenceName": 22,"start": 17190024 ,"end": 17671934 , "pageToken":"", "pageSize": 3 }'
response = http.request(request)
if response.code != "200"
puts "Invalid response: #{response.code}"
puts response.body
exit
end
require 'rubygems'
require 'json'
require 'yaml'
result = JSON.parse(response.body)
puts YAML::dump(result)
import java.net.URL;
import java.net.URLConnection;
import java.net.HttpURLConnection;
import java.io.BufferedReader;
import java.io.InputStream;
import java.io.InputStreamReader;
import java.io.IOException;
import java.io.Reader;
import java.io.DataOutputStream;
public class EnsemblRest {
public static void main(String[] args) throws Exception {
String server = "https://grch37.rest.ensembl.org";
String ext = "/ga4gh/variants/search";
URL url = new URL(server + ext);
URLConnection connection = url.openConnection();
HttpURLConnection httpConnection = (HttpURLConnection)connection;
String postBody = "{ \"variantSetId\": 3, \"callSetIds\":[ \"3:NA19777\" , \"3:HG01242\" , \"3:HG01142\" ], \"referenceName\": 22,\"start\": 17190024 ,\"end\": 17671934 , \"pageToken\":\"\", \"pageSize\": 3 }";
httpConnection.setRequestMethod("POST");
httpConnection.setRequestProperty("Content-Type", "application/json");
httpConnection.setRequestProperty("Accept", "application/json");
httpConnection.setRequestProperty("Content-Length", Integer.toString(postBody.getBytes().length));
httpConnection.setUseCaches(false);
httpConnection.setDoInput(true);
httpConnection.setDoOutput(true);
DataOutputStream wr = new DataOutputStream(httpConnection.getOutputStream());
wr.writeBytes(postBody);
wr.flush();
wr.close();
InputStream response = connection.getInputStream();
int responseCode = httpConnection.getResponseCode();
if(responseCode != 200) {
throw new RuntimeException("Response code was not 200. Detected response was "+responseCode);
}
String output;
Reader reader = null;
try {
reader = new BufferedReader(new InputStreamReader(response, "UTF-8"));
StringBuilder builder = new StringBuilder();
char[] buffer = new char[8192];
int read;
while ((read = reader.read(buffer, 0, buffer.length)) > 0) {
builder.append(buffer, 0, read);
}
output = builder.toString();
}
finally {
if (reader != null) try {
reader.close();
} catch (IOException logOrIgnore) {
logOrIgnore.printStackTrace();
}
}
System.out.println(output);
}
}
library(httr)
library(jsonlite)
library(xml2)
server <- "https://grch37.rest.ensembl.org"
ext <- "/ga4gh/variants/search"
r <- POST(paste(server, ext, sep = ""), content_type("application/json"), accept("application/json"), body = '{ "variantSetId": 3, "callSetIds":[ "3:NA19777" , "3:HG01242" , "3:HG01142" ], "referenceName": 22,"start": 17190024 ,"end": 17671934 , "pageToken":"", "pageSize": 3 }')
stop_for_status(r)
# use this if you get a simple nested list back, otherwise inspect its structure
# head(data.frame(t(sapply(content(r),c))))
head(fromJSON(toJSON(content(r))))
curl 'https://grch37.rest.ensembl.org/ga4gh/variants/search' -H 'Content-type:application/json' \
-H 'Accept:application/json' -X POST -d '{ "variantSetId": 3, "callSetIds":[ "3:NA19777" , "3:HG01242" , "3:HG01142" ], "referenceName": 22,"start": 17190024 ,"end": 17671934 , "pageToken":"", "pageSize": 3 }'
wget -q --header='Content-type:application/json' --header='Accept:application/json' \
--post-data='{ "variantSetId": 3, "callSetIds":[ "3:NA19777" , "3:HG01242" , "3:HG01142" ], "referenceName": 22,"start": 17190024 ,"end": 17671934 , "pageToken":"", "pageSize": 3 }' \
'https://grch37.rest.ensembl.org/ga4gh/variants/search' -O -
