- use strict;
- use warnings;
-
- use HTTP::Tiny;
-
- my $http = HTTP::Tiny->new();
-
- my $server = 'http://grch37.rest.ensembl.org';
- my $ext = '/ga4gh/referencesets/GRCh37.p13?';
- my $response = $http->get($server.$ext, {
- headers => { 'Content-type' => 'application/json' }
- });
-
- die "Failed!\n" unless $response->{success};
-
-
- use JSON;
- use Data::Dumper;
- if(length $response->{content}) {
- my $hash = decode_json($response->{content});
- local $Data::Dumper::Terse = 1;
- local $Data::Dumper::Indent = 1;
- print Dumper $hash;
- print "\n";
- }
-
- import requests, sys
-
- server = "http://grch37.rest.ensembl.org"
- ext = "/ga4gh/referencesets/GRCh37.p13?"
-
- r = requests.get(server+ext, headers={ "Content-Type" : "application/json"})
-
- if not r.ok:
- r.raise_for_status()
- sys.exit()
-
- decoded = r.json()
- print repr(decoded)
-
- import requests, sys
-
- server = "http://grch37.rest.ensembl.org"
- ext = "/ga4gh/referencesets/GRCh37.p13?"
-
- r = requests.get(server+ext, headers={ "Content-Type" : "application/json"})
-
- if not r.ok:
- r.raise_for_status()
- sys.exit()
-
- decoded = r.json()
- print(repr(decoded))
-
- require 'net/http'
- require 'uri'
-
- server='http://grch37.rest.ensembl.org'
- path = '/ga4gh/referencesets/GRCh37.p13?'
-
- url = URI.parse(server)
- http = Net::HTTP.new(url.host, url.port)
-
- request = Net::HTTP::Get.new(path, {'Content-Type' => 'application/json'})
-
- response = http.request(request)
-
- if response.code != "200"
- puts "Invalid response: #{response.code}"
- puts response.body
- exit
- end
-
-
- require 'rubygems'
- require 'json'
- require 'yaml'
-
- result = JSON.parse(response.body)
- puts YAML::dump(result)
-
- import java.net.URL;
- import java.net.URLConnection;
- import java.net.HttpURLConnection;
- import java.io.BufferedReader;
- import java.io.InputStream;
- import java.io.InputStreamReader;
- import java.io.IOException;
- import java.io.Reader;
-
-
- public class EnsemblRest {
-
- public static void main(String[] args) throws Exception {
- String server = "http://grch37.rest.ensembl.org";
- String ext = "/ga4gh/referencesets/GRCh37.p13?";
- URL url = new URL(server + ext);
-
- URLConnection connection = url.openConnection();
- HttpURLConnection httpConnection = (HttpURLConnection)connection;
-
- httpConnection.setRequestProperty("Content-Type", "application/json");
-
-
- InputStream response = connection.getInputStream();
- int responseCode = httpConnection.getResponseCode();
-
- if(responseCode != 200) {
- throw new RuntimeException("Response code was not 200. Detected response was "+responseCode);
- }
-
- String output;
- Reader reader = null;
- try {
- reader = new BufferedReader(new InputStreamReader(response, "UTF-8"));
- StringBuilder builder = new StringBuilder();
- char[] buffer = new char[8192];
- int read;
- while ((read = reader.read(buffer, 0, buffer.length)) > 0) {
- builder.append(buffer, 0, read);
- }
- output = builder.toString();
- }
- finally {
- if (reader != null) try {
- reader.close();
- } catch (IOException logOrIgnore) {
- logOrIgnore.printStackTrace();
- }
- }
-
- System.out.println(output);
- }
- }
-
- library(httr)
- library(jsonlite)
- library(xml2)
-
- server <- "http://grch37.rest.ensembl.org"
- ext <- "/ga4gh/referencesets/GRCh37.p13?"
-
- r <- GET(paste(server, ext, sep = ""), content_type("application/json"))
-
- stop_for_status(r)
-
- # use this if you get a simple nested list back, otherwise inspect its structure
- # head(data.frame(t(sapply(content(r),c))))
- head(fromJSON(toJSON(content(r))))
-
-
- curl 'http://grch37.rest.ensembl.org/ga4gh/referencesets/GRCh37.p13?' -H 'Content-type:application/json'
-
- wget -q --header='Content-type:application/json' 'http://grch37.rest.ensembl.org/ga4gh/referencesets/GRCh37.p13?' -O -
-